Time Zone – GMT-4 (America/New_York)
| Pl | W | D | L | Diff | Pts | |||
| 1 | Mito | 32 | 17 | 10 | 5 | 50:29 | 21 | 61 |
| 2 | V-Varen Nagasaki | 32 | 16 | 11 | 5 | 51:40 | 11 | 59 |
| 3 | Chiba | 32 | 16 | 7 | 9 | 43:31 | 12 | 55 |
| 4 | Tokushima | 32 | 15 | 9 | 8 | 34:20 | 14 | 54 |
| 5 | Vegalta Sendai | 32 | 14 | 12 | 6 | 40:30 | 10 | 54 |
| 6 | Omiya Ardija | 32 | 15 | 8 | 9 | 47:32 | 15 | 53 |
| 7 | Sagan Tosu | 32 | 15 | 8 | 9 | 41:35 | 6 | 53 |
| 8 | Iwata | 32 | 15 | 6 | 11 | 49:42 | 7 | 51 |
| 9 | Imabari | 32 | 12 | 11 | 9 | 39:34 | 5 | 47 |
| 10 | Iwaki | 32 | 11 | 10 | 11 | 48:40 | 8 | 43 |
| 11 | Hokkaido Consadole Sapporo | 32 | 13 | 4 | 15 | 39:55 | -16 | 43 |
| 12 | Kofu | 32 | 11 | 9 | 12 | 35:34 | 1 | 42 |
| 13 | Montedio Yamagata | 32 | 12 | 5 | 15 | 47:46 | 1 | 41 |
| 14 | Blaublitz | 32 | 10 | 8 | 14 | 40:49 | -9 | 38 |
| 15 | Fujieda MYFC | 32 | 9 | 9 | 14 | 37:42 | -5 | 36 |
| 16 | Kumamoto | 32 | 9 | 7 | 16 | 39:51 | -12 | 34 |
| 17 | Oita Trinita | 32 | 7 | 13 | 12 | 24:36 | -12 | 34 |
| 18 | Toyama | 32 | 6 | 9 | 17 | 25:43 | -18 | 27 |
| 19 | Renofa Yamaguchi | 32 | 4 | 13 | 15 | 29:42 | -13 | 25 |
| 20 | Ehime | 32 | 3 | 11 | 18 | 31:57 | -26 | 20 |
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