Time Zone – GMT-4 (America/New_York)
| Pl | W | D | L | Diff | Pts | |||
| 1 | Mito | 34 | 18 | 10 | 6 | 51:30 | 21 | 64 |
| 2 | V-Varen Nagasaki | 34 | 17 | 12 | 5 | 56:41 | 15 | 63 |
| 3 | Chiba | 34 | 17 | 8 | 9 | 44:31 | 13 | 59 |
| 4 | Vegalta Sendai | 34 | 15 | 13 | 6 | 43:32 | 11 | 58 |
| 5 | Tokushima | 34 | 16 | 9 | 9 | 38:21 | 17 | 57 |
| 6 | Omiya Ardija | 34 | 16 | 9 | 9 | 50:34 | 16 | 57 |
| 7 | Sagan Tosu | 34 | 16 | 8 | 10 | 44:38 | 6 | 56 |
| 8 | Iwata | 34 | 16 | 6 | 12 | 52:47 | 5 | 54 |
| 9 | Iwaki | 34 | 13 | 10 | 11 | 51:41 | 10 | 49 |
| 10 | Imabari | 34 | 12 | 13 | 9 | 41:36 | 5 | 49 |
| 11 | Hokkaido Consadole Sapporo | 34 | 14 | 4 | 16 | 41:56 | -15 | 46 |
| 12 | Montedio Yamagata | 34 | 12 | 7 | 15 | 50:49 | 1 | 43 |
| 13 | Kofu | 34 | 11 | 10 | 13 | 36:39 | -3 | 43 |
| 14 | Blaublitz | 34 | 10 | 9 | 15 | 40:50 | -10 | 39 |
| 15 | Oita Trinita | 34 | 8 | 14 | 12 | 25:36 | -11 | 38 |
| 16 | Fujieda MYFC | 34 | 9 | 10 | 15 | 38:44 | -6 | 37 |
| 17 | Kumamoto | 34 | 9 | 8 | 17 | 40:53 | -13 | 35 |
| 18 | Renofa Yamaguchi | 34 | 5 | 14 | 15 | 31:43 | -12 | 29 |
| 19 | Toyama | 34 | 6 | 9 | 19 | 25:46 | -21 | 27 |
| 20 | Ehime | 34 | 3 | 11 | 20 | 33:62 | -29 | 20 |
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