Time Zone – GMT-4 (America/New_York)
| Pl | W | D | L | Diff | Pts | |||
| 1 | Kyoto | 28 | 16 | 6 | 6 | 52:30 | 22 | 54 |
| 2 | Vissel Kobe | 29 | 16 | 5 | 8 | 37:26 | 11 | 53 |
| 3 | Kashima Antlers | 27 | 16 | 3 | 8 | 40:26 | 14 | 51 |
| 4 | Machida | 28 | 15 | 5 | 8 | 42:26 | 16 | 50 |
| 5 | Kashiwa Reysol | 27 | 14 | 8 | 5 | 40:27 | 13 | 50 |
| 6 | Sanfrecce Hiroshima | 28 | 15 | 4 | 9 | 33:19 | 14 | 49 |
| 7 | Urawa Reds | 27 | 12 | 8 | 7 | 38:30 | 8 | 44 |
| 8 | Kawasaki Frontale | 27 | 11 | 9 | 7 | 45:35 | 10 | 42 |
| 9 | Okayama | 28 | 11 | 6 | 11 | 26:28 | -2 | 39 |
| 10 | Cerezo Osaka | 27 | 10 | 8 | 9 | 41:38 | 3 | 38 |
| 11 | Avispa Fukuoka | 27 | 9 | 10 | 8 | 27:26 | 1 | 37 |
| 12 | Gamba Osaka | 28 | 11 | 4 | 13 | 33:40 | -7 | 37 |
| 13 | Shimizu S-Pulse | 27 | 8 | 8 | 11 | 30:35 | -5 | 32 |
| 14 | Verdy | 28 | 8 | 8 | 12 | 16:28 | -12 | 32 |
| 15 | FC Tokyo | 27 | 8 | 6 | 13 | 29:41 | -12 | 30 |
| 16 | Nagoya Grampus | 27 | 7 | 7 | 13 | 33:41 | -8 | 28 |
| 17 | Yokohama F. Marinos | 28 | 6 | 7 | 15 | 26:35 | -9 | 25 |
| 18 | Shonan Bellmare | 27 | 6 | 7 | 14 | 22:42 | -20 | 25 |
| 19 | Yokohama FC | 28 | 6 | 5 | 17 | 18:35 | -17 | 23 |
| 20 | Albirex Niigata | 27 | 4 | 8 | 15 | 27:47 | -20 | 20 |
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